species:   Rhsol
pid:       PID0545
parent:    Rhi-milR-73
paralog:   
locus:     KB317722.1:189954-190067
matures:   ['GCAUUUUGUUGAUUUGUUUGC', 'AAGCAAGUUAACACAAUACAC']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317722.1:189954-190067

0 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

                       **************************                   **************************                    
GCAGGACGAAGCACACAAGGGGGAGGUAAGCAAGUUAACACAAUACACCAGGCUGUAUGCUUUACCUUGGUGCAUUUUGUUGAUUUGUUUGCAGGGCUGGCAACGACAGUCAUA
((........)).............(((((((((((((((.(((.(((((((..(((.....)))))))))).))).)))))))))))))))..(((((.......)))))...
-----------------------------------------------------------------------GCAUUUUGUUGAUUUGUUUGC---------------------- l=21 a=0 c
---------------------------AAGCAAGUUAACACAAUACAC------------------------------------------------------------------ l=21 a=0 c*
-------------------------------------------------AGGCUGUAUGCUUUACCUUGG-------------------------------------------- l=21 a=1 ma
---------------------------AAGCAAGUUAACACAAUACAC------------------------------------------------------------------ l=21 a=0 ma*

-------------------------------------------------AGGCUGUAUGCUUUACCUUGG-------------------------------------------- l=21 a=1 (ma)
----------------------------------------------------------------------UGCAUUUUGUUGAUUUGUUUGCAG-------------------- l=24 a=1 
-------------------------------------------------------------------------AUUUUGUUGAUUUGUUUGCAG-------------------- l=21 a=1 

mb-00010
ax-1011011
ku-01
ss-110111111100
fn-011
